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Legionnaires' caught from compost

A hidden danger in the garden has been highlighted by the case of a man who contracted Legionnaires' disease from handling compost.


Doctors discovered that the 67-year-old man was infected through a cut in his hand.

Reporting the "rare" incident in The Lancet medical journal, they said compost was known to harbour Legionnaires' bugs.

The man, described as previously fit and healthy and a "keen gardener", was inexplicably struck down by a serious fever in March.

Doctors saw him in hospital after eight days of trembling, confusion, lethargy and shortness of breath. He had a high temperature and an X-ray revealed signs of pneumonia in his left lung.

Dr Simon Patten and colleagues from the Royal Alexandra Hospital, Paisley, Scotland, wrote: "We treated our patient with oxygen, intravenous fluids and antibiotics, but his respiratory function deteriorated, necessitating transfer to the intensive care unit for intubation."

"When we questioned the patient to find out the source of this infection, we discovered that he was a keen gardener and had lacerated his left index finger two days before the onset of his symptoms, while planting with compost," they wrote. "We presumed that this cut was the site of entry of the organism."

The patient's condition improved, and seven days later he was moved to a respiratory ward before being discharged.

Legionnaires' disease is normally caused by the bug Legionella pneumophili, which lives naturally in rivers, lakes, and reservoirs, and can also be found in man-made structures containing water such as air conditioning systems. Legionella longbeachae is a less common species first isolated from a patient in Long Beach, California. Unlike its cousin, it is mostly found in soil and potting compost. Infection by this type of Legionnaires' bug is sometimes called Pontiac Fever.

In the UK, just nine cases have been reported since 1984. L. longbeachae infections are much more common in Australia, New Zealand and Japan, where it accounts for about 30% of all cases of Legionnaires' disease. They added: "The UK Royal Horticultural Society has issued warnings about the risk of contracting Legionnaires' disease from handling compost and has announced that bags of potting compost will carry cautionary statements."

Self-Irrigating Desert Plant Discovered



A desert plant has apparently figured out how to water itself.

Ecologists had been puzzling over the desert rhubarb for years: Instead of the tiny, spiky leaves found on most desert plants, this rare rhubarb boasts lush green leaves up to a meter wide.

Now scientists from the University of Haifa-Oranim in Israel have discovered that ridges in the plant’s giant leaves actually collect water and channel it down to the plant’s root system, harvesting up to 16 times more water than any other plant in the region.

“It is the first example of a self-irrigating plant,” said plant biologist Gidi Ne’eman, a co-author on the paper published in March in Naturwissenschaften, a German journal of ecology. “This is the only case we know, but in other places in the world there might be additional plants that use the same adaptions.”

The desert rhubarb grows in the mountainous deserts of Israel and Jordan, where there’s only about 75mm of rainfall each year. Even during the rainy season, the region’s light rainfalls often don’t penetrate the rocky soil of the desert. Plants with large leaves and a deep root system, like the desert rhubarb, typically can’t survive in such an arid climate.

But when the researchers measured the plant’s water absorption during a light rain, they discovered that water infiltrated the soil 10 times deeper around the desert rhubarb than in surrounding areas. Upon closer examination, scientists discovered deep grooves around the plant’s veins, which are coated in a waxy cuticle that helps channel water down to the root.

“Even in the slightest rains,” the researchers wrote, “the typical plant harvests more than 4,300 cubic centimeters of water per year and enjoys a water regime of about 427 millimeters per year, equivalent to the water supply in a Mediterranean climate.”

Some scientists say the desert rhubarb isn’t all that, however. “Many plants channel water to their base to be absorbed by the root,” Lindy Brigham, a plant ecologist from the University of Arizona, wrote in an email. “Just look at the way plant leaves are shaped and how they branch from the base in many cases.” The architecture of the desert rhubarb’s leaves is unusual, she said, but not necessarily the only example of this adaptation.

Square Watermelons! It's true.



It's not a fad. The technique actually has practical applications. "The reason they're doing this in Japan is because of lack of space," said Samantha Winters of the National Watermelon Promotion Board in Orlando, Florida.

A fat, round watermelon can take up a lot of room in a refrigerator, and the usually round fruit often sits awkwardly on refrigerator shelves. But clever Japanese farmers have solved this dilemma by forcing their watermelons to grow into a square shape.

Farmers insert the melons into square, tempered glass cases while the fruit is still growing on the vine.

The square boxes are the exact dimensions of Japanese refrigerators, allowing full-grown watermelons to fit conveniently and precisely onto refrigerator shelves.

But cubic fruit comes with a price: Each square watermelon costs 10,000 yen, the equivalent of about $82. Regular watermelons in Japan cost from $15 to $25 each.

Japanese farmers have perfected the art of growing square watermelons, but they aren’t about to reveal their secret process. When a square watermelon sells for $82 who can blame them.

Buddha shaped Pears

Gao Xianzhang has managed to create what some would call the holiest fruits ever, pears shaped like


Gao has been working on his pear-growing technique for six years and this season he managed to grow 10,000 Buddha-shaped baby pears. Each fruit is grown in an intricate Buddha mould and ends up looking like a juicy figurine. The ingenious farmer says the locals in his home village of Hexia, norther China, have been buying his Buddha pears as soon as he picks them from the trees. Most of them think they are cute and that they bring good luck.

Gao Xianzhang pears aren’t cheap, roughly $1.8 each, but their success in China convinced him to start exporting them into Europe.

Lifeline Hospitals & Loyola College joint PG Diplomo course on "Stem Cell Therapeutics"

Loyola College (LIVE), Chennai & Lifeline Institute of Regenerative Medicine (LIRM), Perungudi, Chennai jointly invites applications for the following course.


Course:
P.G. Diploma in “Stem cell therapeutics”.


Duration:
01 year program
03 hours of class per day on weekdays.


Eligibility:
BTech / Msc Life Sciences/ MBBS/ BDS/ BVSc and final year candidates also may apply.


Course Commencement:
17 August 2009


Application deadline:
10 August 2009


To apply:
Contact: 09884407195/ 09840940283

Email: stemcell.lirm@gmail.com / lirm@lifelinehospitals.com

Lifeline Institute of Regenerative Medicine also offers:

1. Special trainings and projects in stem cell research to all branches of life science students through out the year.
2. Special training on the advanced flowcytometric techniques (FACS Aria).

Loyola College (LIVE) also offers:
1) Summer training / project works on Bioinformatics and Medical Transcriptions to all branches of life science students through out the year.

TURTLES MAKE SENSE AFTER AL

Evolutionary development study describes a critical fold that sends the reptile off on its own By Susan Milius
Turtles may be weird, but according to new research, they’re not that weird. Their funny arrangement of shell and shoulder is just the same old land-dweller vertebrate stuff — with a little fold.

At first a turtle embryo grows much like a chicken or mouse. But then the developing body wall makes a critical fold, and the usual body plan starts to become an unusual turtle, Hiroshi Nagashima of Kobe University and his colleagues report in the July 10 Science.

Nothing else has a body plan like a turtle. Its ribs don’t grow inside its chest as a cage but instead fuse in the developing skin layer on its back to create one bony armored covering.

“It is not just that turtles 'grew a shell,'” says paleontologist Ben Kear of La Trobe University in Melbourne, Australia. In the evolution of that shell, bones and muscles had to shift around relative to other reptiles, birds and mammals, and turtle shoulders ended up inside the rib cage. “In essence this means that the turtle skeleton is inside-out,” he says.

Odd as they are, turtles clearly belong to the lineage of amniotes, which includes mammals, birds and reptiles. Turtles, which are at least 200 million years old, “have survived all kinds of stuff — we’re talking extinction of the dinosaurs and myriad climate changes,” Kear says. Yet there’s scant fossil evidence of turtles in the making to explain how their forms arose as they split off from birds and crocodiles.

Knowing how a basic amniote embryo ends up developing into something so radically different could shed light on turtle history, says paleontologist Michael Lee of the South Australian Museum in Adelaide. “Some intermediate stages in this process might resemble real intermediate — fossil — stages in evolution,” he says.

To sort out how turtles develop, Nagashima and his colleagues worked with eggs of Chinese soft-shelled turtles (Pelodiscus sinensis) bought from a farm. The researchers used tissue-specific stains as well as substances that detect activity of particular genes to figure out which bits of the tiny embryos were on their way to becoming the bones and muscles of the adult. At each stage in development, the researchers compared their embryos with developing chickens and mice at comparable stages.

Any features shared by all three embryos probably came from distant common ancestors of all amniotes, including people, the researchers note.

In turtles, chickens and mice, the earliest stages of development looked much the same, the researchers reported. Then the turtle embryos veered off on their own path. The developing muscle tissue that would lie along adult ribs in a standard amniote began to fold underneath itself in the turtle. This tissue tucked inward, bending up to lie below the developing ribs. On this kinked-under section, the shoulder blades, or scapulas, formed.

If this fold could be straightened out, the scapulas would lie outside the rib cage, as they do in chickens, mice and people. For turtles then, “the position of the scapula is not a novelty,” Nagashima says. Essentially, “turtles have the same body plan as other amniotes.”

That critical fold in the tissue maps out the line that becomes an important embryological feature of turtle embryos called the carapacial ridge. Earlier research has shown that this ridge drives the development of the bony back of the animal. The fold also allows developing muscles to form connections in ways that they don’t in the mouse and the chicken.

The researchers also noted that the turtle ribs stop short in comparison with mice and chickens. Turtle ribs grow out only along the sides of what will become the backbone instead of curving into the body wall to form the whole rib cage. Those short turtle ribs mingle with the skin tissue creating the fused bony shell on the turtle’s back.

“Very, very sophisticated work,” says reptile paleontologist Olivier Rieppel of the Field Museum in Chicago in describing the extensive detective work required to trace all the tissues and muscles.

He has studied the oldest known fossil of an ancestral turtle, and he says the new interpretation of turtle embryology may fit well with the fossil record. Last year he and colleagues described Odontochelys semitestacea from a fossil collected in 220-million-year-old marine sediments in southwestern China. The turtle had a standard armored underside but not a full shell on its back. Its ribs widened, but its shoulder blades still lay forward of instead of inside the ribs.

Nagashima speculates that the embryonic fold was evolving a bit at a time and maybe hadn’t reached as far around the body in this ancestral turtle as it does today. Clever suggestion, Rieppel says.

To understand turtle history, paleontologists really need more fossils, says Robert Reisz of the University of Toronto’s Mississauga campus in Canada. In the meantime, the new Japanese paper “clarifies a unique evolutionary event, one that gave rise to a really neat group of animals, our beloved turtles.”

Calorie-Counting Monkeys Live Longer


Rodents, yeast, and roundworms all have something in common: They live longer when they consume less. Now a primate has joined the calorie-restriction club. After 20 long years of waiting, scientists have concluded that rhesus monkeys that eat nearly a third less food than normal monkeys age more slowly. The results come as close as any can to proving that calorie restriction could significantly slow aging in humans--even if such a lean diet would not appeal to most of us.
Researchers first discovered the connection between lean diets and extended life spans in a 1935 study of calorie-restricted rats. In the past decade, studies in yeast and worms have pinpointed some genes that may be responsible. Scientists believe the genes somehow ramp up systems to protect an organism from environmental stress and may have evolved to help organisms survive in environments where food was scarce. In rodent studies, calorie restriction can extend life span by 20% to 80%. Whether calorie restriction also slows aging in primates wasn't known, however.

Two decades ago, three different research groups in the United States decided to fill this gap. The groups have previously published updates on their monkeys' health, but in tomorrow's issue of Science, one of them reports survival data from their colony of 76 rhesus monkeys. The team, led by gerontologist Richard Weindruch of the University of Wisconsin, Madison, began monitoring the animals when they hit 7 to 14 years old--monkey adulthood. Researchers allowed half of the monkeys to eat as much as they wanted during the day, while restricting the other half to a diet with 30% fewer calories. The scientists gave the restricted monkeys vitamin and mineral supplements to ensure they did not suffer malnutrition and treated any animals that fell sick, says Weindruch.

Studying aging in monkeys takes patience. Mice and rats only live for a couple of years, while these monkeys can live to 40, and the average life span is 27 years. Now that the surviving monkeys have reached their mid- to late 20s, the Wisconsin group could glean how calorie restriction was affecting their life span. Sixty-three percent of the calorie-restricted animals are still alive compared to only 45% of their free-feeding counterparts. For age-related deaths caused by illnesses such as cardiovascular disease and cancer, the voracious eaters died at three times the rate of restricted monkeys: 14 versus five monkeys, respectively. Another seven control and nine lean monkeys died from causes not related to aging such as complications from anesthesia or injuries. Leaner diets also reduced muscle and brain gray matter deterioration, two conditions associated with aging. (The team has not yet studied cognitive differences between the two groups.)

Researchers who study aging are split on how much stock to put in the study. Leonard Guarente, a molecular biologist at the Massachusetts Institute of Technology in Cambridge who has studied aging in yeast, believes that not enough monkeys have died yet to make definitive comparisons between the two groups. As of March, when Weindruch's group submitted the paper, about half of the colony was still alive. "The gap [in survival rates] may separate more, but it's still too early to tell," Guarente says. On the other hand, molecular biologist Matthew Kaeberlein of the University of Washington, Seattle, thinks the gap as it stands now is still compelling. He points to the difference in age-related deaths between the two groups as the more relevant statistic. "The fact that they see a significant effect at this point suggests there will be a robust effect when they finish the study," he says.

Weindruch and his collaborators plan to continue monitoring the remaining monkeys, which could stretch the study's length past 3 decades. "If we reach the 40-year-old life span, the study could continue for another 15 years," Weindruch said. "That would probably round out my career."

IISc to extract oil from Diatoms, algae


Driving will soon be a pollution-friendly activity if a small team of scientists from India and Canada have their way. Scientists at the Indian Institute of Science (IISc) have collaborated with their counterparts in Canada to ensure that global warming becomes a thing of the past.

According to the scientists, the answer to a clean and sustainable energy production lies in the microscopic algae — diatoms.

Some geologists believe that a majority of the world’s crude oil originated from diatoms. “Diatoms are the lowest in the order of the food chain, but are known to have oil glands that can yield an effective amount of oil. They also act as carbon sequesters trapping in carbon and releasing oxygen. We hope that this could work as a replacement for conventional energy or gasoline paving the way for a clean fuel that can effectively work as a solution to tackle global warming,” said Dr T.V. Ramachandra at IISc.

The research, that will soon be published in an international journal, indicates that a solution to the impending crude oil scarcity exists. It offers solutions for a cost-effective renewable source of alternative energy and also helps stop the emission of carbon dioxide into the atmosphere to an extent. Diatoms can trap and store carbon, sending out emissions free of any pollutants.

The team that comprises IISc professors Durga Madhab Mahapatra, Karthick B. and Dr Ramachandra and Richard Gordon from the University of Manitoba in Canada have also proposed a new approach to sustainable energy that uses solar panels by incorporating altered diatoms that secrete oil products.

IBAB- Job assured Biotechnology / Bioinformatics PG diplomo courses admissions- 2009

Institute of Bioinformatics and Applied Biotechnology (IBAB) (Government of Karnataka), Bangalore,invites applications for the following job oriented courses which almost has 100% placement record.


Courses:
Postgraduate Diploma in Bioinformatics
Postgraduate Diploma in Biotechniques
Postgraduate Diploma in Cheminformatics


Eligibility:
B.Sc /B.Tech /M.Sc /M.Tech and final year students awaiting final results.


Selection method:
Written test and Interview


Application deadline:
12 July 2009
Date of entrance test:
19 July 2009

Need Hydrogen Storage? Think Poultry

By Phil Berardelli
ScienceNOW Daily News
23 June 2009

Here's a case for which solving an energy problem could ease a challenging environmental problem as well. Researchers have discovered that carbonized chicken feathers could provide an inexpensive, environmentally friendly way to store hydrogen fuel for future motor vehicles. If the concept is proven--and perhaps a bigger if, accepted by the automobile industry--it could go a long way toward helping to dispose of the 2.7 billion kilograms of chicken feathers generated each year by commercial poultry operations.
Hydrogen is a leading alternative fuel for vehicles. The byproducts of its combustion are nonpolluting, and its source--water--is superabundant. One hitch is the amount of energy required to manufacture it, and another is storing enough of it onboard to give vehicles a cruising range that approaches that of gasoline or diesel fuel. Hydrogen has proven notoriously difficult to store in sufficient quantities without placing it under enormous pressure, something that greatly adds to the weight of a vehicle and adds a serious explosion hazard. The best idea so far has been carbon nanotubes--microscopic structures that can pack away large quantities of hydrogen at normal pressure within a relatively small space. But a storage tank made of the nanotubes would cost millions of dollars.

Now a team at the University of Delaware, Newark, says it has an unlikely candidate: chicken feathers. It turns out that the feathers, which are made of keratin--the same protein in fingernails and beaks--comprise strong, hollow tubes. The team, led by chemical engineer Richard Wool, had been investigating the feathers' potential for improving the performance of electronic microcircuits. The air inside the tubes helps to speed electrons along the printed wiring, but the feathers weren't stiff enough to hold the circuit boards together very well. So the team tried a heating technique to strengthen the bonds between the carbon atoms in the keratin.

As the team reported today at the 13th Annual Green Chemistry and Engineering Conference in College Park, Maryland, carbonizing the feathers gave them a strength approaching that of the nanotubes. They could also store up to 1.7% of their weight as hydrogen, about as much as carbon nanotubes could store. Moreover, the feathers cost virtually nothing to produce. "They're a nuisance commodity," says Wool.

The researchers estimate that a hydrogen-storage tank using the carbonized feathers would cost only about $200 when mass-produced. It's a major step forward, but the U.S. Department of Energy has set a target capacity for hydrogen-storage techniques of 6% of weight, so the carbonized feathers need improvement. Still, Wool is confident that the goal can be achieved. "There are all kinds of next steps," he says.

Even if hydrogen doesn't become the next primary transportation fuel, finding a safer and economical way to store the gas would still be of great value, says chemical engineer John Dorgan of the Colorado School of Mines in Golden. Hydrogen has several important nontransportation uses, he explains, such as a cooling medium in electricity generation. So the innovative storage technique developed by Wool and his team could be much less hazardous than pressurized tanks. In addition, he says, "it simply makes sense to use renewable materials to build the renewable energy infrastructure."

Soybeans Grow Where Nuclear Waste Glows


Soy crops are so tough they can flourish in the contaminated soil around Chernobyl and produce healthy offspring.

If scientists can understand how plants survive in ultra-hostile environments, it will help them engineer super hearty plants to withstand drought conditions or grow on marginal cropland.

“The fact that plants were able to adapt to the area of the world’s largest nuclear accident, is very encouraging,” says Martin Hajduch, a plant biotechnology expert at the Slovak Academy of Sciences and coauthor of the study in the Journal of Proteome Research. “So we were interested to know how plants can do such a job.”

Hajduch’s team built and harvested seeds from a garden near the village of Chistogalovka, which is roughly five kilometers from the ruined nuclear power plant. They analyzed the seeds with all sorts of modern proteomics tricks, going a step beyond the narrowly-focused studies that other scientists have done.

Biologists have been studying the effects of radiation on plants for decades, and they have identified a handful of proteins that seem to protect crops from genetic damage, but this is the first time that anyone has taken a snapshot of everything that’s going on inside of Chernobyl-grown vegetables.

The Slovak scientists started by freezing each seed with liquid nitrogen and crushing it to extract a mix of proteins. Then they sorted those molecules in an electrified block of gel, and identified each one with a mass spectrometer. As a reference, they did the same thing to seeds from a garden 100 kilometers from the disaster area.

Hajduch learned that the contaminated plants make a lot of changes to defend themselves, adjusting the levels of dozens of proteins that also guard against disease, heavy metals, and salt. All of that makes sense, but the biggest difference between plants from the wasteland and the controls was somewhat surprising. The levels of hundreds of proteins that are known for their ability to shuttle other proteins around — or lock them up in storage — had been lowered.

As a result of those adjustments, the levels of Cesium-137 in the beans was remarkably low. The plants are healthy and fertile, but definitely not safe to eat.

TEST MIGHT ASCERTAIN WHO NEEDS APPENDECTOMY

Biomarker in urine could minimize unnecessary surgery By Nathan Seppa

A compound identifiable in urine might help doctors distinguish appendicitis from other abdominal problems and avoid needless surgery, researchers report online June 23 in the Annals of Emergency Medicine.

Because signs of appendicitis are particularly difficult to assess in young children and elderly adults, surgeons unnecessarily remove a healthy appendix in 10 to 20 percent of appendectomies performed in the United States, says pediatrician Alex Kentsis of Harvard Medical School and Children’s Hospital Boston.

True appendicitis, on the other hand, often goes untreated because it may cause few symptoms until the appendix ruptures. At that point, a patient risks intestinal infection and severe complications, Kentsis says.

In an effort to find biomarkers that tip off appendicitis better, Kentsis teamed with biochemist Hanno Steen and physician Richard Bachur, both also at Children’s Hospital, to test for 57 compounds in the urine of 67 children being treated for suspected appendicitis. The children had an average age of 11.

Overall, 25 of these patients were found to have appendicitis and underwent surgery. The diagnoses resulted from physical examination, symptom assessment and tests such as CT scans, ultrasounds or other measures. Tissue analysis after surgery confirmed the original diagnoses.

In conducting the urine sample analysis, the researchers didn’t know which children were ultimately diagnosed with appendicitis and which had other diagnoses. These included ovarian cysts, constipation, abdominal pain or other problems that were ascertained by follow-up phone calls six to eight weeks later.

The compound that stood out among the children with appendicitis was leucine-rich alpha-2-glycoprotein, or LRG. Immune cells called neutrophils make LRG. “Release of LRG from neutrophils is a kind of specific feature of appendicitis,” Kentsis says.

LRG is not the only compound overproduced during an attack of appendicitis. But in this analysis, it was the most reliable biomarker to show up in the urine. High levels of LRG in the urine correctly identified a child who had appendicitis and low LRG levels suggested no appendicitis 97 percent of the time, the researchers found.

“They may have found a biomarker that’s really sensitive,” says Robert C. Barber, a geneticist at the University of Texas Southwestern Medical Center at Dallas. “This is a very interesting finding.” Nevertheless, he cautions, “appendicitis is unlikely to have a magic bullet biomarker.” More likely, researchers will eventually need more than one.

Kentsis agrees, noting that other teams have already found some promising biomarkers. “You could imagine using them in combination, if one isn’t sufficient,” he says.

The team will now concentrate on validating the new findings and creating a simpler, clinic-ready kit for testing urine, Kentsis says. Meanwhile, the researchers plan to look at whether the LRG test might also work in adults.

The use of CT scans and ultrasound has improved appendicitis diagnosis in recent years, but these tests still fail to catch some inflamed appendices and wrongly pinpoint healthy ones, the authors note. Also, in some regions of the world, Kentsis says, such high-tech diagnostics just aren’t readily available.

Gene Protects Alcoholism


In an interesting finding, a study revealed that a gene variant detected among a tribe in Orissa has been protecting them from harmful effects of alcohol.

The study conducted by the department of anthropology at Utkal University here has showed that the Bondas — one the most primitive tribes of Orissa- are immune to the side effects of alcoholism.

Alcohol is an agent of cirrhosis of liver, toxic psychosis, gastritis, pancreatitis, cardiac myopathy and so on. But surprisingly none of these diseases are seen among the Bonda highlanders, who are addicted to different kinds alcoholic beverages.

The reason: presence of a gene variant ALDH2.

Jayant Kumar Nayak, a research scholar of Anthropological Survey of India, in association of with the Utkal University has conducted a study on Bondas to know whether they are genetically protected from alcoholism. On a proportionate random sampling, out of 25 villages, he selected nine for the study covering 714 households of 2,700 population. Genomic DNA was extracted from 110 unrelated adult Bondas by the ASI following ethical guidelines after taking their consents. Both ADH and ADLH2 genes, considered protecting variants for alcohol, were detected.

Curry leaves Fights Tooth Decay


The curry leaf tree (Murraya Koenigii spreng – a green leafy vegetable) is grown all over India and other countries for its aromatic leaves which are used daily as an ingredient in Indian cuisine.

The fresh curry leaves contain 2.6% volatile essential oils (containing sesquiterpenes and monoterpenes) and the essential oils in the curry leaves are sufficiently soluble in water.

They contain 21000mug total carotene, 7100mug beta carotene, 93.9mug total folic acid, 0.21mg riboflavin, 0.93mg iron, 830mg calcium, 57mg phosphorus and 0.20mg zinc per 100g.

The cold extract of curry leaves (10g of cut fresh curry leaves in 200ml of distilled water) has a pH of 6.3 to 6.4. (unpublished personal observations). Chlorophyll has been proposed as an anticariogenic agent and it also helps to reduce halitosis8.

We have observed that holding curry leaves in the mouth for 5 to 7 minutes is helpful in reducing halitosis and that the terpenes have been found to reduce airborne chemicals and bacteria.

In addition to the presence of EO, the curry leaves contain chlorophyll, beta carotene and folic acid, riboflavin, calcium and zinc and all these can act on the oral tissues and help in keeping up good oral health. Chewing 2 to 4 fresh curry leaves with 10 to 15mls water in the mouth, swishing for 5 to 7 minutes and rinsing the mouth out with water can be of help in keeping good oral hygiene and as the curry leaf is a green leafy vegetable it will be safe and cheap to use as mouthwash. as an ingredient in Indian cuisine.

The fresh curry leaves contain 2.6% volatile essential oils (containing sesquiterpenes and monoterpenes) and the essential oils in the curry leaves are sufficiently soluble in water.

They contain 21000mug total carotene, 7100mug beta carotene, 93.9mug total folic acid, 0.21mg riboflavin, 0.93mg iron, 830mg calcium, 57mg phosphorus and 0.20mg zinc per 100g.

The cold extract of curry leaves (10g of cut fresh curry leaves in 200ml of distilled water) has a pH of 6.3 to 6.4. (unpublished personal observations). Chlorophyll has been proposed as an anticariogenic agent and it also helps to reduce halitosis8.

We have observed that holding curry leaves in the mouth for 5 to 7 minutes is helpful in reducing halitosis and that the terpenes have been found to reduce airborne chemicals and bacteria.

In addition to the presence of EO, the curry leaves contain chlorophyll, beta carotene and folic acid, riboflavin, calcium and zinc and all these can act on the oral tissues and help in keeping up good oral health. Chewing 2 to 4 fresh curry leaves with 10 to 15mls water in the mouth, swishing for 5 to 7 minutes and rinsing the mouth out with water can be of help in keeping good oral hygiene and as the curry leaf is a green leafy vegetable it will be safe and cheap to use as mouthwash.

How to Use a Hemacytometer

Classic Techniques in Cell Biology:
How to use a hemacytometer

by Heather Buschman

French physiologist Louis-Charles Malassez (1842-1909) studied a lot of things in his life. In dentistry, the residual cells of the epithelial root sheath in the periodontal ligament are now called the epithelial rests of Malassez. A genus of fungi is also named for him, which includes species that can cause dandruff and other skin infections.

Malassez also invented the hemacytometer, the thick glass microscope slide traditionally used to count the number of cells in a given volume of liquid. He made an indentation in a regular microscope slide to form a small space that could hold a few drops of cells in suspension. With etched lines and a known area and depth, the number of cells in that particular volume could be calculated. Since the invention was first used to count blood cells, it became known as the hemacytometer (hem = blood, cyto = cells), sometimes also spelled hemocytometer or haemocytometer.

Over the past few years, more than 4,000 people viewed a Scientist Solutions discussion on how to count cells with a hemacytometer. Even for people who learned cell cultures years ago, remembering the calculation can be tricky. Here’s a quick cheat sheet:

1. Transfer a small sample of cell suspension (~100 μl) to a microfuge tube.

2. Dilute 1:2 with Trypan blue or other cell stain.

3. Carefully transfer approximately 10 μl of cells to one of the semi-reflective panels on a hemacytometer covered with a cover slip. Allow the capillary action of the cover slip to gently draw in just enough liquid to fill the chamber liquid. Do not overload.

4. Under the microscope, you should see a grid of 9 squares. Focus the microscope on one of the 4 outer squares in the grid. The square should contain 16 smaller squares.

5. Count the number of live cells in at least 2 of the outer squares. (Dead cells turn dark blue with Trypan staining.)

6. Use the following equation to calculate the number of cells in the original volume:



Some tips for best results:
• Gently pipette the cell suspension up and down to mix well and reduce aggregation before removing a small sample.

• Remove any bubbles in the hemacytometer before counting.

• Count cells touching the top and right borders of each of the 4 squares, but not the cells touching the bottom and left borders.

• If there are less than 100 cells total in all 4 squares, count more squares or start again with a more concentrated cell suspension. If there are too many cells to count accurately, start again by diluting the sample 1:2 or 1:10 before adding Trypan blue.

REPLACING MICRORNA FOR CANCER TREATMENT



Inserting a missing molecule in mice may shrink liver tumors or limit their growth By Jenny Lauren Lee Web edition : Thursday, June 11th, 2009


It’s a simple idea: Treat cancer by finding out what’s absent in a cancer cell and replacing it.

Experiments in mice suggest that inserting one small missing molecule could fight cancer without harming normal tissue, researchers at Johns Hopkins University in Baltimore and the Nationwide Children’s Hospital in Columbus, Ohio, report in a study in the June 12 Cell.

The molecule in this case is a small RNA chain known as a microRNA. MicroRNAs (abbreviated as miRNAs) are involved in a wide range of body processes relating to cellular differentiation and tissue growth. They run about 22 units long, but their size belies their influence — they help regulate hundreds of thousands of genes.

In the past decade, certain flavors of miRNA have been shown to be missing from cancer cells. Scientists have previously explored the idea that replacing the missing miRNAs might reverse the cancer, but not in a way that could lead to viable treatments, said Joshua Mendell of Johns Hopkins, one of the study’s authors.

“One of the things that distinguishes this work is that we used a clinically relevant delivery vehicle to replace a microRNA that’s missing,” Mendell says. The team used a harmless virus that acts as a sort of mail carrier to deliver the miRNA to the cells.

The researchers worked with mice made to develop tumors similar to those in human liver cancer. Most of the untreated mice developed cancers that nearly consumed their livers. But eight out of 10 mice receiving the miRNA had small liver tumors or none at all.

“It’s door-opening research” that will encourage others to move into the field, says George Calin of the University of Texas M.D. Anderson Cancer Center in Houston.

Mendell and colleagues focused on a particular strain of miRNA called miR-26a, chosen because it was absent in liver cancer cells but abundant in normal liver cells. “We thought that the tumor cells might be sensitive to the miRNA” but that the normal parts of the liver would not be harmed, Mendell says. Restoring the miR-26a stopped the cancerous cells from creating two molecules called cyclins that are used in cell replication, effectively preventing the cells from multiplying.

“Although microRNAs have been shown to play an important role in cancer pathogenesis, not too many reports have shown that altering a single microRNA can suppress cancer development in vivo,” comments Baohong Zhang of East Carolina University in Greenville, N.C. “This result has opened a novel strategy for cancer therapy.”

The study has great practical benefit, Calin says, because it shows potential for treating a specific type of cancer — hepatocellular carcinoma, or HCC, which accounts for 80 to 90 percent of all liver cancers.

Calin also says that this research suggests it may be possible to use different miRNAs as therapies for many diseases, not just cancers. MiRNAs have a wide variety of functions, and some have been linked with autoimmune disorders, diabetes and heart disease, he says.

Despite the promising results, Mendell says, there are a lot of hurdles to jump before this type of treatment could be used for people.

For one thing, the liver cancer in the mice is much more aggressive than most human liver cancers. The mouse livers were infested with multiple tumors; humans with HCC typically have only one. And since much is still unknown about how miRNAs work, this type of therapy might have unwanted consequences.

“I think we’re at the earliest stages of understanding,” Mendell says. “There’s more we don’t know than we know.”

TUBERCULOSIS BACTERIUM SUBVERTS BASIC CELL FUNCTIONS

New findings reveal that the microbe achieves virulence by disrupting immune cells' internal processes By Nathan Seppa Web edition : Wednesday, June 10th, 2009

Tuberculosis microbes invading human immune cells carry a cargo that increases TB virulence by inducing the cells to act less like sentinels and more like bystanders, tests in mice show. In a report in the June 11 Nature, a team hypothesizes that this initial infection strategy lays the groundwork for TB’s uncanny ability to lie dormant in an infected person for years.

Even though TB has been studied for hundreds of years, it still guards many secrets — including precisely how it undercuts immune cells.

“Understanding the mechanisms by which the bacteria are having their way with our host cells will be very helpful in coming up with targets that we might hit,” says Kathleen McDonough, a microbiologist at the State University of New York at Albany and the Wadsworth Center of the New York State Department of Health, also in Albany.
Mycobacterium tuberculosis gets engulfed by cells called macrophages, the shock troops of the immune system. Scientists knew that the bacteria had evolved mechanisms to proliferate in these cells, but exactly how was unclear, says coauthor William Bishai, an infectious disease physician at Johns Hopkins University in Baltimore.

Bishai and his colleagues had noted that both TB bacteria and the macrophages they had entered had excess amounts of cyclic AMP, a compound that serves as a master regulator of many cell functions. So the researchers investigated an enzyme needed to make cyclic AMP. Curiously, M. tuberculosis has 17 genes that code for versions of this enzyme.

To test the effects of these 17 genes, the researchers infected mice with TB using aerosol sprays containing various combinations of the genes. Microbes harboring the enzyme encoded by a gene called Rv0386 out-competed the other microbes for survival in the mice and caused more severe lung disease. That suggests that the gene, along with the excess cyclic AMP production it induces, helps the microbe to sabotage the macrophage’s defensive abilities, thus making the TB more virulent.

In lab tests on human macrophages, the researchers showed that M. tuberculosis gins up cyclic AMP production upon entering a macrophage and unleashes this cargo once inside. That sets off a chain reaction that steers the cells to overproduce TNF alpha, a protein that causes inflammation, which contributes to tissue damage. Mice infected with real TB made 10 times as much TNF alpha in their lungs as did mice infected with TB lacking the Rv0386 gene.

This study is the first to pin down that M. tuberculosis is actively trafficking cyclic AMP into the cells and that “this really does affect the outcome of infections,” says McDonough.This reliance on cyclic AMP and the enzyme that makes it could prove useful to drug makers in the long run, she says.

Meanwhile, excess inflammation spurred by TNF alpha may be linked to the formation of lesions called granulomas, a hallmark of TB, Bishai says. TB granulomas have a central core of dead tissue surrounded by fatty debris and an outer rim of fibrous tissue and immune cells. Granuloma formation corrals the microbe but also enables it to lie latent in a person for decades. “We hypothesize that TB has a program that leads to granuloma formation, which gives the organism sanctuary,” Bishai says.

STRESSED-OUT DNA TURNS MOUSY BROWN HAIR GRAY

Stem cells responsible for hair color lose self-renewing abilities By Laura Sanders Web edition : Thursday, June 11th, 2009

Gray hair may be a mark of distinction in some circles, but it’s also a sign of a depleted stem cell population. DNA damage causes stem cells that produce hair-color cells in mice to lose their “stemness,” leaving brown hair gray, a report in the June 12 Cell shows. The results suggest a new way stem cell populations can be depleted as cells accumulate DNA damage over time.

The new study “opens up a new paradigm for how we’re going to study stem cell aging in many systems,” comments Kevin Mills of the Jackson Laboratory in Bar Harbor, Maine. The report “fills in what’s been a hole in our understanding of stem cell biology.”

Colorful locks depend on a group of special cells in hair follicles called melanocyte stem cells. Each of these cells divides into two cells: One that replaces itself and another that differentiates into a pigment-producing daughter cell called a melanocyte, which imbues hair with its browns, reds and blacks. Earlier research has suggested that the depletion of these stem cells was to blame for grayness. But how exactly these stem cells disappeared was mysterious. With no more stem cells around to produce melanocytes, hair turns gray.

Emi Nishimura at Tokyo Medical and Dental University in Japan and her colleagues tracked the fate of these stem cells and grayness in mice exposed to DNA-damaging radiation. The exposure level was fairly high, intended to magnify the effects of DNA damage that cells gradually accumulate with age.

Mice typically begin to go gray when they are 1 year to 1½ years old, after about 65 percent of their life, Nishimura says. But following exposure to high doses of radiation, hair on mice as young as 7 to 8 weeks grew in gray, while control mice remained brown, the team found. Other DNA-damaging agents, including hydrogen peroxide, had the same graying effect.

The team next looked at the stem cells in the hair follicles during this graying process. Researchers usually think of two ways stem cells stop working, say Paul Hasty, a geneticist at the University of Texas Health Science Center in San Antonio. The stem cells either die or stop dividing, he says. “But for these melanocyte stem cells, that’s not what happens.”

Instead, the DNA damage causes them to lose their “stemness,” the new report shows. Once the cells have racked up enough DNA damage, they become melanocytes and lose the ability to replace themselves or to replenish melanocyte cell populations. Once the melanocytes die, the hair is left with no pigment-producing cells.

“What’s really unexpected is that the cells differentiate in response to DNA damage,” instead of dying or halting division, Mills says. This irreversible pathway might be going on in stem cells in other tissues like the brain or blood, he notes. Figuring out the details of how these cells lose their “stemness” may ultimately lead to new ways to stave off stem cell depletion. “If you can modulate the stemness checkpoint, you can influence the activity of these stem cells,” Mills says.

ORIGINS OF THE SWINE FLU VIRUS

Researchers use evolutionary history to trace the early days of the pandemic By Laura Sanders Web edition : Thursday, June 11th, 2009

Closely related forms of the H1N1 strain of influenza virus circulated undetected in swine for years, a study published online June 11 in Nature reports. The virus, which has spread to multiple continents, has now been classified by the World Health Organization as a pandemic.

“Based on this report, we had a virus circulating in pigs for 10 years and nobody knew anything about it because we were not doing proper surveillance,” says Daniel Perez, an influenza expert at the University of Maryland in College Park.
Researchers traced the sordid past of the H1N1 virus by comparing mutations among different strains of the virus. Genetic sequences of 15 swine influenzas from Hong Kong and two human H1N1 viruses were compared with 796 sequences representing a large spectrum of related strains from humans, birds and pigs.

Analyzing numbers of mutations allowed an international team of researchers to estimate how long ago the strains first existed. Virus strains more than 90 percent identical to the current H1N1 strain were circulating in pigs between 9.2 and 17.2 years ago, the researchers found. The current strain “evidently spread without anyone noticing it for 10 years,” says Michael Worobey, an evolutionary biologist at the University of Arizona in Tucson and one of the study’s authors. “We need to spend more energy looking at what’s in pigs.”

The molecular clock method the team used assumes that genomes mutate at relatively constant rates, a tricky assumption for sporadically mutating influenza strains.

“Any estimate like this has a certain amount of uncertainty to it,” Worobey says. Although the numbers are not exact, he says, the data clearly show that a similar version of the virus was around long before anyone was aware of it.

The report also shows that each bit of the current virus’s DNA had been circulating on its own and primarily in pigs for years before combining to form the virus responsible for the current pandemic. Some genes have been in pigs for decades. “Across the genome, this is something that came from pigs,” Worobey says.

Some of these DNA segments came from a North American swine influenza virus, which itself is made of bits of avian, human and swine influenzas (called a triple-reassortant strain). Other segments came from Eurasian swine with avian virus components. The combination of the triple-reassortant strain from North America and the avianlike strain from Eurasia probably happened as live pigs were transported between North America and Eurasia, the authors say.

“We can do all the surveillance we want in humans, but if we really want to prevent pandemic influenza…, a fundamental change in efforts on the animal health side has to be made,” Perez says.

On the same day the new report appeared, the World Health Organization classified the H1N1 outbreak as a pandemic, defined as showing sustained person-to-person transmission in many parts of the world.

WHO Director-General Margaret Chan said that the organization is raising the alert level after determining that flu cases are now showing up in people who didn’t bring it from another region and weren’t in contact with such travelers. “Further spread is considered inevitable,” Chan said in a news conference.
Thomas Frieden, director of the Centers for Disease Control and Prevention, said in a June 11 press briefing that the new classification does not imply that the H1N1 virus has become more virulent.

“This does not mean that there is any difference in the level of severity of the flu,” he said. Rather, the pandemic label “is important because it does send the strong message that the virus is here, it’s in all likelihood here to stay, and it’s important that we continue our aggressive efforts to prepare and respond.”

So far no decision has been made to mobilize pharmaceutical companies to start mass-producing vaccines aimed specifically at the novel H1N1 virus. But preliminary steps to make that a seamless move have already been taken.